Publications

Shang Gao, Michael T Young, John X Qiu, Hong-Jun Yoon, James B Christian, Paul A Fearn, Georgia D Tourassi, Arvind Ramanthan, "Hierarchical attention networks for information extraction from cancer pathology reports," JAMIA - A scholarly Journal of Informatics in Health and Biomedicine, March 2018,  vol. 25, no. 3, Oxford University Press, 2018 . doi: 10.1093/jamia/ocx131 view
Steven P.Hamilton, Stuart R.Slattery, Thomas M.Evans, "Multigroup Monte Carlo on GPUs: Comparison of history- and event-based algorithms," Annals of Nuclear Energy, March 2018,  vol. 113, Elsevier, 2018 , pp. 506-518, . doi: 10.1016/j.anucene.2017.11.032 view
Billy K. Poon, Aaron S. Brewster, Nicholas K. Sauter, "Deploying cctbx.xfel in Cloud Computing and High Performance Computing Environments," Computational Crystallography Newsletter , March 2018,  no. 8, Computational Crystallography , 2018 , pp. 10-19, view
Laura E Ratcliff, A Degomme, José A Flores-Livas, Stefan Goedecker, Luigi Genovese, "Affordable and accurate large-scale hybrid-functional calculations on GPU-accelerated supercomputers," Journal of Physics:Condensed Matter, February 2018,  vol. 30, no. 9, IOP Publishing, 2018 view
Xiaogang Yang, Vincent De Andrade, William Scullin, Eva L. Dyer, Narayanan Kasthuri, Francesco De Carlo, Doğa Gürsoy, "Low-dose x-ray tomography through a deep convolutional neural network," Scientific Reports, February 2018,  no. 2575, https://www.nature.com/articles/s41598-018-19426-7, 2018 . doi: 10.1038/s41598-018-19426-7
K. D. Hammond, S. Blondel, L. Hu, D. Maroudas, B. D. Wirth, "Large-scale atomistic simulations of low-energy helium implantation into tungsten single crystals," Acta Materialia, February 2018,  vol. 144, Elsevier, 2018 , pp. 561-578, . doi: 10.1016/j.actamat.2017.09.061 view
M. Piarulli, A. Baroni, L. Girlanda, A. Kievsky, A. Lovato, Ewing Lusk, L. E. Marcucci, Steven C. Pieper, R. Schiavilla, M. Viviani, and R. B. Wiringa, "Light-Nuclei Spectra from Chiral Dynamics," Physical Review Letters, February 2018,  no. 120, APS, 2018 , pp. 052503, . doi: 10.1103/PhysRevLett.120.052503 view
ZhenLi, XinBian, Yu-Hang Tang, George Em Karniadakis, "A dissipative particle dynamics method for arbitrarily complex geometries," Journal of Computational Physics, February 2018,  vol. 355, Elsevier, 2018 , pp. 534-547, . doi: 10.1016/j.jcp.2017.11.014 view
Lifei Zhao, Zhen Li, Bruce Caswell, Jie Ouyang, George Em Karniadakis, "Active learning of constitutive relation from mesoscopic dynamics for macroscopic modeling of non-Newtonian flows," Journal of Computational Physics, February 2018,  Elsevier, 2018 . doi: 10.1016/j.jcp.2018.02.039 view
John R.Tramm, Kord S.Smith, Benoit Forget, Andrew R.Siegel, "ARRC: A random ray neutron transport code for nuclear reactor simulation," Annals of Nuclear Energy, February 2018,  vol. 112, Elsevier, 2018 , pp. 693-714, . doi: 10.1016/j.anucene.2017.10.015 view
Y. Li, K. Nomura, J. Insley, V. Morozov, K. Kumaran, N. A. Romero, W. A. Goddard III, R. K. Kalia, A. Nakano, and P. Vashishta, " Scalable Reactive Molecular Dynamics Simulations for Computational Synthesis ," Computing in Science & Engineering, February 2018,  vol. PP, no. 99, 2018 view
Jinyong Feng, Igor A.Bolotnov, "Effect of the wall presence on the bubble interfacial forces in a shear flow field," International Journal of Multiphase Flow, February 2018,  vol. 99, Elsevier, 2018 , pp. 73-85, . doi: 10.1016/j.ijmultiphaseflow.2017.10.004 view
J. Taylor Childers,Thomas D. Uram,Doug Benjamin,Thomas J. LeCompte,Michael E. Papka, "An Edge Service for Managing HPC Workflows,"  February 2018,  ACM Press, 2018 . doi: 10.1145/3152493.3152557
Taborda, Ricardo, " Influence of the Source, Seismic Velocity, and Attenuation Models on the Validation of Deterministic Ground Motion Simulations ," Proceedings of the 16th World Conference on Earthquake Engineering, January 2018,  Santiao, Chili, 2018 view
Walker, J., Merzari, E., Obabko, A., Fischer, P., & Siegel, A., "Accurate prediction of the wall shear stress in rod bundles with the spectral element method at high Reynolds numbers," International Journal of Heat and Fluid Flow, January 2018,  vol. 50, 2018 , pp. 287-299, . doi: 10.1016/j.ijheatfluidflow.2014.08.012 view
Widanagamaachchi, Wathsala; Hammond, Karl; Lo, Li-Ta; Wirth, Brian; Samsel, Francesca; Sewell, Christopher; Ahrens, James; Pascucci, Valerio, "Visualization and Analysis of Large-Scale Atomistic Simulations of Plasma-Surface Interactions," Eurographics, January 2018,  The Eurographics Association, 2018 . doi: DOI = {10.2312/eurovisshort.20151117} view
V. W. Yu, F. Corsetti, A. Garcia, W. P. Huhn, M. Jacquelin, W. Jia, B. Lange, L. Lin, J. Lu, W. Mi, A. Seifitokaldani, A. Vazquez-Mayagoitia, C. Yang, H. Yang, V. Blum, "ELSI: A unified software interface for Kohn–Sham electronic structure solvers," Computer Physics Communications, January 2018,  vol. 222, 2018 , pp. 267-285, . doi: 10.1016/j.cpc.2017.09.007 view
Riccardo Balin, Kenneth E. Jansen, " A Comparison of RANS, URANS, and DDES for High Lift Systems from HiLiftPW-3 Read More: https://arc.aiaa.org/doi/10.2514/6.2018-1254," ARC Aerospace Research Central, January 2018,  2018 AIAA Aerospace Sciences Meeting, AIAA SciTech Forum, AIAA, 2018 . doi: 10.2514/6.2018-1254 view
Evgenii O. Fetisov, Mansi S Shah, Christopher Knight, Michael Tsapatsis, J. Ilja Siepmann, "Understanding the Reactive Adsorption of H2S and CO2 in Sodium-Exchanged Zeolites," ChemPhysChem, January 2018,  Wiley Online, 2018 . doi: 10.1002/cphc.201700993 view
John X. Qiu, Hong-Jun Yoon, Paul A. Fearn, Georgia D. Tourassi , "Deep Learning for Automated Extraction of Primary Sites From Cancer Pathology Reports," IEEE Journal of Biomedical and Health Informatics , January 2018,  vol. 22, no. 1, IEEE, 2018 , pp. 244-251, . doi: 10.1109/JBHI.2017.2700722 view

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