Publications

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Donghyuk Suh, Brian Radak, Christophe Chipot, Benoit Roux., "Enhanced configurational sampling with hybrid non-equilibrium molecular dynamics–Monte Carlo propagator," The Journal of Chemical Physics, January 2018,  vol. 148, no. 1, AIP, 2018 . doi: 10.1063/1.5004154 view abstract
Sebille, E. van & et al., "Lagrangian ocean analysis: Fundamentals and practices," Ocean Modelling, January 2018,  vol. 121, Elsevier, 2018 , pp. 49-75, . doi: 10.1016/j.ocemod.2017.11.008 view abstract
Alexandru Macridin,Alexey Burov,Eric Stern,James Amundson,Panagiotis Spentzouris, "Parametric Landau damping of space charge modes," Physical Review Accelerators and Beams, January 2018,  American Physical Society (APS), 2018 . doi: 10.1103/physrevaccelbeams.21.011004 view abstract
John X. Qiu, Hong-Jun Yoon, Paul A. Fearn, Georgia D. Tourassi , "Deep Learning for Automated Extraction of Primary Sites From Cancer Pathology Reports," IEEE Journal of Biomedical and Health Informatics , January 2018,  vol. 22, no. 1, IEEE, 2018 , pp. 244-251, . doi: 10.1109/JBHI.2017.2700722 view abstract
I L Rakhno, N V Mokhov, I S Tropin, D Ene, "Activation assessment of the soil around the ESS accelerator tunnel," Journal of Physics, January 2018,  vol. 1046, no. 1, IOP Science, 2018 , pp. 012020, view abstract
Hiroyuki Kumazoe, Aravind Krishnamoorthy, Lindsay Bassman, Fuyuki Shimojo, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, "Photo-induced Contraction of Layered Materials," MRS Advances, January 2018,  Cambridge University Press, 2018 . doi: 10.1557/adv.2018.127 view abstract
Sungwook Hong, Aravind Krishnamoorthy, Chunyang Sheng, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, "A Reactive Molecular Dynamics Study of Atomistic Mechanisms During Synthesis of MoS2 Layers by Chemical Vapor Deposition," MRS Advances, January 2018,  Cambridge Core, 2018 . doi: 10.1557/adv.2018.67 view abstract
Glenn K. Lockwood, Shane Snyder, George Brown, Kevin Harms, Philip Carns, Nicholas J. Wright, "TOKIO on ClusterStor: Connecting Standard Tools to Enable Holistic I/O Performance Analysis," Proceedings of the 2018 Cray User Group, January 2018,  California Digital Library, 2018 view abstract
T. Ichibha, K. Hongo, I. Motochi, N.W. Makau, G.O. Amolo, R. Maezono, "Adhesion of electrodes on diamond (111) surface: A DFT study," Diamond and Related Materials, January 2018,  vol. 81, Elsevier, 2018 , pp. 168-175, . doi: 10.1016/j.diamond.2017.12.008 view abstract
J. Guenther, R. Bellwied, S. Borsanyi, Z. Fodor, A. Pasztor, C. Ratti, S.D. Katz, K. Szabo , " Recent lattice QCD results at non-zero baryon densities ," Proceedings of Science, January 2018,  vol. 311, Sissa Medialab srl Partita, 2018 . doi: 10.22323/1.311.0032 view abstract
Kyle Chard,Eli Dart,Ian Foster,David Shifflett,Steven Tuecke,Jason Williams, "The Modern Research Data Portal: a design pattern for networked, data-intensive science," PeerJ, January 2018,  PeerJ, 2018 . doi: 10.7717/peerj-cs.144 view abstract
Paolo Parotto, "Parametrized Equation of State for Qcd from 3d Ising Model," Proceedings of Science, January 2018,  Sissa Medialab, 2018 , pp. 1-8, . doi: 10.22323/1.311.0036 view abstract
Gonzalo P. Rodrigo, P.-O. Östberg, Erik Elmroth, Katie Antypas, Richard Gerber, Lavanya Ramakrishnan, "Towards Understanding Hpc Users and Systems: A Nersc Case Study," Journal of Parallel and Distributed Computing, January 2018,  vol. 111, ELSEVIER, 2018 , pp. 206-221, . doi: 10.1016/j.jpdc.2017.09.002 view abstract
Michael Kruse, Hal Finkel, "A Proposal for Loop-Transformation Pragmas," Evolving OpenMP for Evolving Architectures, January 2018,  Barcelona, Spain, Springer, 2018 , pp. 37-52, . doi: 10.1007/978-3-319-98521-3_3 view abstract
Evan O'Connor, Sean Couch, "Two-Dimensional Core-Collapse Supernova Explosions Aided by General Relativity with Multidimensional Neutrino Transport," Nuclear and High Energy Physics, January 2018,  American Astronomical Society, 2018 , pp. 23, . doi: 10.3847/1538-4357/aaa893 view abstract
Hasan Metin Aktulga, Chris Knight, Paul Coffman, Kurt A O’Hearn, Tzu-Ray Shan, Wei Jiang, "Optimizing the Performance of Reactive Molecular Dynamics Simulations for Many-Core Architectures," The International Journal of High Performance Computing Applications, January 2018,  vol. 33, no. 2, SAGE Publications, 2018 , pp. 304-321, . doi: 10.1177/1094342017746221 view abstract
Nils E. R. Zimmermann, Daniel C. Hannah, Ziqin Rong, Miao Liu, Gerbrand Ceder, Maciej Haranczyk, Kristin A. Persson, "Electrostatic Estimation of Intercalant Jump-Diffusion Barriers Using Finite-Size Ion Models," The Journal of Physical Chemistry Letters, January 2018,  vol. 9, no. 3, American Chemical Society (ACS), 2018 , pp. 628–634, . doi: 10.1021/acs.jpclett.7b03199 view abstract
H. Zhang,R. Betti,V. Gopalaswamy,R. Yan,H. Aluie, "Nonlinear excitation of the ablative Rayleigh-Taylor instability for all wave numbers," American Physical Society (APS), January 2018,  American Physical Society (APS), 2018 . doi: 10.1103/physreve.97.011203 view abstract

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